MAGNET V2.0 is a bioinformatics tool with three components:
WARNING: Due to high volume, uploaded datasets and
results generated will be deleted after 1 year.
MAGNET integrates data from:|
After you submit your job, you will be taken to a page where you can follow the progress of your job. You will be emailed when it is completed.
Please pick one of the following jobs:
Input sample and platform data from the Gene Expression Omnibus (GEO), an RNAseq Matrix, or select TCGA data, and MAGNET will generate correlation (Pearson's or Spearman's) values for the user-selected genes. Generates both tab-delimited and Cytoscape compatible (.sif, .edf) output.
Input sample and platform data from the Gene Expression Omnibus (GEO), an RNAseq Matrix, or select TCGA data, and MAGNET will integrate this data with other data sources, and will generate a weighted PPIN for the user-selected proteins. Weights will be found using a logistic regression model described in our publication.
The externally hosted tool below has also been developed by the MAGNET team at the Case Center for Proteomics and Bioinformatics.
Input sample and platform data from the GEO, and the bimodality and associated p-value between gene lists will be calculated.