Overview


MAGNET V2.0 is a bioinformatics tool with three components:
  • Generation of Coexpression Networks
  • Weighted Protein Protein Interaction Networks
  • Bimodality of Coexpression (externally hosted)
For more in depth description of the jobs, please see our publication.


WARNING: Due to high volume, uploaded datasets and
results generated will be deleted after 1 year.


MAGNET integrates data from:
DatabaseRelease
Gene OntologyAugust 2014
UniprotAugust 2014
HPRDRelease 9
IntAct November 2014


Submit Jobs

After you submit your job, you will be taken to a page where you can follow the progress of your job. You will be emailed when it is completed.

Please pick one of the following jobs:

Generate Coexpresion Matrix

Input sample and platform data from the Gene Expression Omnibus (GEO), an RNAseq Matrix, or select TCGA data, and MAGNET will generate correlation (Pearson's or Spearman's) values for the user-selected genes. Generates both tab-delimited and Cytoscape compatible (.sif, .edf) output.

Submit Job


Generate Weighted Protein Protein Interaction Network (PPIN)

Input sample and platform data from the Gene Expression Omnibus (GEO), an RNAseq Matrix, or select TCGA data, and MAGNET will integrate this data with other data sources, and will generate a weighted PPIN for the user-selected proteins. Weights will be found using a logistic regression model described in our publication.

Submit Job

Other

The externally hosted tool below has also been developed by the MAGNET team at the Case Center for Proteomics and Bioinformatics.

Find Bimodality between Gene Lists

Input sample and platform data from the GEO, and the bimodality and associated p-value between gene lists will be calculated.
Submit Job


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